title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Astrocitos_M {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/MA_HC_Astrocitos_M.RData")
```ENSG00000038427
Statistics of ENSG00000038427 meta-analisys
kable(sig.genes.df['ENSG00000038427',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000038427 | VCAN | -1.340831 | -1.059942 | -0.7790517 | 0 | 0.6810195 | 0.7114076 | 0.1433138 | 0 | 0 | 1 | 0 | 0 | 9.743669 | 3 | 3 | GSE163577 | 0.5710385 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000038427_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000038427_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000038427_INFLUENCE.png")
ENSG00000067082
Statistics of ENSG00000067082 meta-analisys
kable(sig.genes.df['ENSG00000067082',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000067082 | KLF6 | -0.3969757 | -0.3074195 | -0.2178634 | 0 | 0.227882 | 0.8923106 | 0.0456927 | 0 | 0 | 1 | 0 | 1e-07 | 7.86928 | 3 | 3 | GSE163577 | 0.5277673 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000067082_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000067082_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000067082_INFLUENCE.png")
ENSG00000072310
Statistics of ENSG00000072310 meta-analisys
kable(sig.genes.df['ENSG00000072310',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000072310 | SREBF1 | -0.8483553 | -0.6861431 | -0.5239308 | 0 | 2.020739 | 0.3640844 | 0.0827629 | 0.0003192 | 1.026327 | 1.01037 | 0 | 0 | 12.57547 | 3 | 3 | non | 0.9389287 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000072310_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000072310_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000072310_INFLUENCE.png")
ENSG00000082805
Statistics of ENSG00000082805 meta-analisys
kable(sig.genes.df['ENSG00000082805',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000082805 | ERC1 | 0.5195897 | 0.7372115 | 0.9548332 | 0 | 1.313473 | 0.5185408 | 0.1110335 | 0 | 0 | 1 | 0 | 2e-07 | 7.630547 | 3 | 3 | non | 0.4181816 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000082805_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000082805_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000082805_INFLUENCE.png")
ENSG00000101577
Statistics of ENSG00000101577 meta-analisys
kable(sig.genes.df['ENSG00000101577',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000101577 | LPIN2 | 0.295613 | 0.3911556 | 0.4866983 | 0 | 1.787149 | 0.4091906 | 0.0487471 | 0 | 0 | 1 | 0 | 0 | 11.68526 | 3 | 2 | Study43,GSE163577 | 0.3042567 | Study43,GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000101577_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000101577_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000101577_INFLUENCE.png")
ENSG00000111371
Statistics of ENSG00000111371 meta-analisys
kable(sig.genes.df['ENSG00000111371',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000111371 | SLC38A1 | -1.902017 | -1.61099 | -1.319963 | 0 | 2.841286 | 0.2415587 | 0.1484859 | 0.0203021 | 29.60933 | 1.420643 | 0 | 0 | 22.84828 | 3 | 3 | GSE163577,syn52293442_hc | 0.9684283 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000111371_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000111371_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000111371_INFLUENCE.png")
ENSG00000114541
Statistics of ENSG00000114541 meta-analisys
kable(sig.genes.df['ENSG00000114541',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000114541 | FRMD4B | 0.3246961 | 0.4239824 | 0.5232688 | 0 | 1.286265 | 0.5256434 | 0.0506572 | 0 | 0 | 1 | 0 | 0 | 12.7867 | 3 | 3 | GSE163577 | 0.3585136 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000114541_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000114541_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000114541_INFLUENCE.png")
ENSG00000119138
Statistics of ENSG00000119138 meta-analisys
kable(sig.genes.df['ENSG00000119138',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000119138 | KLF9 | -0.6842106 | -0.5261092 | -0.3680077 | 0 | 0.1846914 | 0.9117899 | 0.0806655 | 0 | 0 | 1 | 0 | 5e-07 | 7.30978 | 3 | 3 | non | 0.8128739 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000119138_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000119138_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000119138_INFLUENCE.png")
ENSG00000131378
Statistics of ENSG00000131378 meta-analisys
kable(sig.genes.df['ENSG00000131378',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000131378 | RFTN1 | -0.7884886 | -0.6324754 | -0.4764621 | 0 | 2.51664 | 0.2841309 | 0.0796001 | 0.0048542 | 20.52897 | 1.25832 | 0 | 0 | 11.46683 | 3 | 3 | non | 0.8338081 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000131378_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000131378_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000131378_INFLUENCE.png")
ENSG00000134107
Statistics of ENSG00000134107 meta-analisys
kable(sig.genes.df['ENSG00000134107',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000134107 | BHLHE40 | -0.7366989 | -0.6006367 | -0.4645744 | 0 | 1.569264 | 0.4562876 | 0.0694208 | 0 | 0 | 1 | 0 | 0 | 13.74795 | 3 | 3 | GSE163577 | 0.52648 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000134107_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000134107_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000134107_INFLUENCE.png")
ENSG00000151572
Statistics of ENSG00000151572 meta-analisys
kable(sig.genes.df['ENSG00000151572',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000151572 | ANO4 | 0.1423319 | 0.1898144 | 0.237297 | 0 | 0.8992719 | 0.342977 | 0.0242262 | 0 | 0 | 1 | 0 | 0 | 11.13314 | 2 | 2 | GSE163577 | 0.5061106 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000151572_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000151572_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000151572_INFLUENCE.png")
ENSG00000169504
Statistics of ENSG00000169504 meta-analisys
kable(sig.genes.df['ENSG00000169504',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000169504 | CLIC4 | -1.413285 | -1.105493 | -0.7977007 | 0 | 4.067375 | 0.1308521 | 0.1570398 | 0.0365257 | 50.82824 | 2.033688 | 0 | 0 | 8.710596 | 3 | 3 | GSE163577,syn52293442_hc | 0.4176085 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000169504_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000169504_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000169504_INFLUENCE.png")
ENSG00000172508
Statistics of ENSG00000172508 meta-analisys
kable(sig.genes.df['ENSG00000172508',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000172508 | CARNS1 | 0.2010258 | 0.2815449 | 0.3620639 | 0 | 0.7182158 | 0.3967298 | 0.0410819 | 0 | 0 | 1 | 0 | 1e-07 | 8.171289 | 2 | 2 | GSE163577 | 0.5294515 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000172508_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000172508_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000172508_INFLUENCE.png")
ENSG00000182141
Statistics of ENSG00000182141 meta-analisys
kable(sig.genes.df['ENSG00000182141',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182141 | ZNF708 | -0.596057 | -0.4695808 | -0.3431046 | 0 | 1.038045 | 0.595102 | 0.0645299 | 0 | 0 | 1 | 0 | 0 | 9.395507 | 3 | 3 | syn52293442_hc | 0.702682 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000182141_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000182141_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000182141_INFLUENCE.png")
ENSG00000186417
Statistics of ENSG00000186417 meta-analisys
kable(sig.genes.df['ENSG00000186417',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000186417 | GLDN | 0.0981222 | 0.1332078 | 0.1682933 | 0 | 1.448613 | 0.4846606 | 0.0179011 | 0 | 0 | 1 | 0 | 0 | 9.850976 | 3 | 3 | GSE163577 | 0.4598708 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000186417_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000186417_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000186417_INFLUENCE.png")
ENSG00000225484
Statistics of ENSG00000225484 meta-analisys
kable(sig.genes.df['ENSG00000225484',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000225484 | NUTM2B-AS1 | -1.298221 | -1.114592 | -0.9309624 | 0 | 0.0480558 | 0.8264816 | 0.0936901 | 0 | 0 | 1 | 0 | 0 | 27.75869 | 2 | 2 | non | 0.9253997 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000225484_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000225484_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000225484_INFLUENCE.png")
ENSG00000231871
Statistics of ENSG00000231871 meta-analisys
kable(sig.genes.df['ENSG00000231871',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000231871 | IPO9-AS1 | -0.3617979 | -0.2812657 | -0.2007336 | 0 | 0.0033102 | 0.9541198 | 0.0410886 | 0 | 0 | 1 | 0 | 1e-07 | 8.171289 | 2 | 2 | non | 0.989447 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000231871_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000231871_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000231871_INFLUENCE.png")
ENSG00000253877
Statistics of ENSG00000253877 meta-analisys
kable(sig.genes.df['ENSG00000253877',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000253877 | LINC01608 | 0.2619871 | 0.3358573 | 0.4097276 | 0 | 0.2341474 | 0.6284655 | 0.0376896 | 0 | 0 | 1 | 0 | 0 | 14.62338 | 2 | 2 | GSE163577 | 0.5418901 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000253877_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000253877_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000253877_INFLUENCE.png")
ENSG00000259417
Statistics of ENSG00000259417 meta-analisys
kable(sig.genes.df['ENSG00000259417',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000259417 | CTXND1 | 0.1836202 | 0.2526856 | 0.321751 | 0 | 0.2640339 | 0.6073622 | 0.0352381 | 0 | 0 | 1 | 0 | 0 | 9.091095 | 2 | 2 | GSE163577 | 0.509679 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000259417_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000259417_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000259417_INFLUENCE.png")
ENSG00000280809
Statistics of ENSG00000280809 meta-analisys
kable(sig.genes.df['ENSG00000280809',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000280809 | LINC00836 | -1.604047 | -1.244923 | -0.8857983 | 0 | 8.287529 | 0.015863 | 0.1832301 | 0.0689801 | 75.86735 | 4.143764 | 0 | 1e-07 | 8.043344 | 3 | 3 | GSE163577,syn52293442_hc | 0.9913252 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000280809_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000280809_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/M/plots/ENSG00000280809_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:45:09 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2